RDF Graph Measures for the Analysis of RDF Graphs

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vivo-weill-cornell-medical-college

Data and Resources

Measures

Notation Description Value
m graph volume (no. of edges) 1,600,499
n graph size (no. of vertices) 331,647
dmax max degree 101,347
d+max max in-degree 101,347
d-max max out-degree 2,506
z mean total degree 9.652
h+
h-index, respecting in-degree
Known from citation networks, this measure is an indicator for the importance of a vertex in the graph, similar to a centrality measure. A value of h means that for the number of h vertices the degree of these vertices is greater or equal to h. A high value of h could be an indicator for a "dense" graph and that its vertices are more "prestigious". The value is computed by respecting the in-degree distribution of the graph, denoted as h+.
246
h h-index, respecting total degree 264
pmu fill, respecting unique edges only 0
p fill, respecting overall edges 0
mp
parallel edges
Based on the measure mu, this is the number of parallel edges, i.e., the total number of edges that share the same pair of source and target vertices. It is computed by subtracting mu from the total number of edges m, i.e. mp = m – mu.
23,069
mu
unique edges
In RDF, a pair of subject and object resources may be described with more than one predicate. Hence, in the graphs, there may exist a fraction of all edges that share the same pair of (subject and object) vertices. The value for mu represents the total number of edges without counting these multiple edges between a pair of vertices.
1,577,430
y reciprocity 0.253
δ
diameter (approximated)
The diameter is the longest shortest path between a pair of two vertices in the graph (as there can be more than one path for the pair of vertices). As this requires all possible paths to be computed, this is a very computational intensive measure. We used the pseudo_diameter-algorithm provided by graph-tool, which is an approximation method for the diameter of the graph. As the graph can have many components, this algorithm very often returns the value of 1. If this should be the case for this graph, we compute the diameter for the largest connecting component.
20
PR max pagerank value 0.005
Cd+ max in-degree centrality 0.306
Cd- max out-degree centrality 0.008
Cd max degree centrality 0.306
α powerlaw exponent, degree distribution 1.821
dminα dmin for α 293
α+ powerlaw exponent, in-degree distribution 2.178
dminα+ dmin for α+ 13
σ+ standard deviation, in-degree distribution 328.46
σ- standard deviation, out-degree distribution 9.954
cv+ coefficient variation, in-degree distribution 6,806.18
cv- coefficient variation, out-degree distribution 206.259
σ2+ variance, in-degree distribution 107,886.083
σ2- variance, out-degree distribution 99.079
C+d graph centralization 0.306
z- mean out-degree 10.118
$$deg^{--}(G)$$ max partial out-degree 2,476
$$\overline{deg^{--}}(G)$$ mean partial out-degree 1.621
$$deg^-_L(G)$$ max labelled out-degree 24
$$\overline{deg^-_L}(G)$$ mean labelled out-degree 6.242
$$deg^-_D(G)$$ max direct out-degree 2,506
$$\overline{deg^-_D}(G)$$ mean direct out-degree 9.972
z+ mean in-degree 4.877
$$deg^{++}(G)$$ max partial in-degree 101,347
$$\overline{deg^{++}}(G)$$ mean partial in-degree 3.407
$$deg^+_L(G)$$ max labelled in-degree 11
$$\overline{deg^+_L}(G)$$ mean labelled in-degree 1.432
$$deg^+_D(G)$$ max direct in-degree 101,347
$$\overline{deg^+_D}(G)$$ mean direct in-degree 4.806
$$deg_P(G)$$ max predicate degree 447,961
$$\overline{deg_P}(G)$$ mean predicate degree 17,983.135
$$deg^+_P(G)$$ max predicate in-degree 157,699
$$\overline{deg^+_P}(G)$$ mean predicate in-degree 11,093.416
$$deg^-_P(G)$$ max predicate out-degree 77,900
$$\overline{deg^-_P}(G)$$ mean predicate out-degree 5,278.708
$$\propto_{s-o}(G)$$ subject-object ratio 0.467
$$r_L(G)$$ ratio of repreated predicate lists 0.965
$$deg_{PL}(G)$$ max predicate list degree 64,525
$$\overline{deg_{PL}}(G)$$ mean predicate list degree 28.646
$$C_G$$ distinct classes 70
$$S^C_G$$ all different typed subjects 157,699
$$r_T(G)$$ ratio of typed subjects 0.997

Plots

Degree distribution shown here
In-degree distribution shown here
Last update of this page: 25 March 2020 13:38:39 CET