RDF Graph Measures for the Analysis of RDF Graphs

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bio2rdf-interpro

Data and Resources

Measures

Notation Description Value
m graph volume (no. of edges) 4,130,140
n graph size (no. of vertices) 926,978
dmax max degree 421,746
d+max max in-degree 421,721
d-max max out-degree 17,382
z mean total degree 8.911
h+
h-index, respecting in-degree
Known from citation networks, this measure is an indicator for the importance of a vertex in the graph, similar to a centrality measure. A value of h means that for the number of h vertices the degree of these vertices is greater or equal to h. A high value of h could be an indicator for a "dense" graph and that its vertices are more "prestigious". The value is computed by respecting the in-degree distribution of the graph, denoted as h+.
315
h h-index, respecting total degree 512
pmu fill, respecting unique edges only 0
p fill, respecting overall edges 0
mp
parallel edges
Based on the measure mu, this is the number of parallel edges, i.e., the total number of edges that share the same pair of source and target vertices. It is computed by subtracting mu from the total number of edges m, i.e. mp = m – mu.
1,808,516
mu
unique edges
In RDF, a pair of subject and object resources may be described with more than one predicate. Hence, in the graphs, there may exist a fraction of all edges that share the same pair of (subject and object) vertices. The value for mu represents the total number of edges without counting these multiple edges between a pair of vertices.
2,321,624
y reciprocity 0.006
δ
diameter (approximated)
The diameter is the longest shortest path between a pair of two vertices in the graph (as there can be more than one path for the pair of vertices). As this requires all possible paths to be computed, this is a very computational intensive measure. We used the pseudo_diameter-algorithm provided by graph-tool, which is an approximation method for the diameter of the graph. As the graph can have many components, this algorithm very often returns the value of 1. If this should be the case for this graph, we compute the diameter for the largest connecting component.
2
PR max pagerank value 0.003
Cd+ max in-degree centrality 0.455
Cd- max out-degree centrality 0.019
Cd max degree centrality 0.455
α powerlaw exponent, degree distribution 2.748
dminα dmin for α 67
α+ powerlaw exponent, in-degree distribution 1.814
dminα+ dmin for α+ 312
σ+ standard deviation, in-degree distribution 578.387
σ- standard deviation, out-degree distribution 28.426
cv+ coefficient variation, in-degree distribution 12,981.4
cv-
Effective measure!Score: 0.256

Datasets in this domain can be very well described by means of this particular measure.

coefficient variation, out-degree distribution 638.005
σ2+ variance, in-degree distribution 334,531.122
σ2- variance, out-degree distribution 808.051
C+d graph centralization 0.455
z-
Effective measure!Score: 0.096

Datasets in this domain can be very well described by means of this particular measure.

mean out-degree 23.39
$$deg^{--}(G)$$
Effective measure!Score: 0.117

Datasets in this domain can be very well described by means of this particular measure.

max partial out-degree 17,382
$$\overline{deg^{--}}(G)$$ mean partial out-degree 2.977
$$deg^-_L(G)$$
Effective measure!Score: 0.159

Datasets in this domain can be very well described by means of this particular measure.

max labelled out-degree 26
$$\overline{deg^-_L}(G)$$ mean labelled out-degree 7.856
$$deg^-_D(G)$$
Effective measure!Score: 0.042

Datasets in this domain can be very well described by means of this particular measure.

max direct out-degree 2,118
$$\overline{deg^-_D}(G)$$ mean direct out-degree 13.148
z+ mean in-degree 4.534
$$deg^{++}(G)$$ max partial in-degree 421,721
$$\overline{deg^{++}}(G)$$ mean partial in-degree 4.524
$$deg^+_L(G)$$
Effective measure!Score: 0.08

Datasets in this domain can be very well described by means of this particular measure.

max labelled in-degree 3
$$\overline{deg^+_L}(G)$$ mean labelled in-degree 1.002
$$deg^+_D(G)$$ max direct in-degree 176,545
$$\overline{deg^+_D}(G)$$
Effective measure!Score: 0.055

Datasets in this domain can be very well described by means of this particular measure.

mean direct in-degree 2.548
$$deg_P(G)$$ max predicate degree 686,574
$$\overline{deg_P}(G)$$ mean predicate degree 133,230.323
$$deg^+_P(G)$$ max predicate in-degree 176,576
$$\overline{deg^+_P}(G)$$ mean predicate in-degree 44,749.806
$$deg^-_P(G)$$ max predicate out-degree 176,545
$$\overline{deg^-_P}(G)$$ mean predicate out-degree 29,450.903
$$\propto_{s-o}(G)$$ subject-object ratio 0.173
$$r_L(G)$$ ratio of repreated predicate lists 0.904
$$deg_{PL}(G)$$ max predicate list degree 46,629
$$\overline{deg_{PL}}(G)$$ mean predicate list degree 10.461
$$C_G$$ distinct classes 30
$$S^C_G$$ all different typed subjects 176,576
$$r_T(G)$$ ratio of typed subjects 1

Plots

Degree distribution shown here
In-degree distribution shown here
Last update of this page: 25 March 2020 13:38:38 CET