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Imputation and genome wide association analyses: SCOOP, STILTS and UKHLS single-variant association analysis: Genotypes from SCOOP, STILTS and UKHLS controls were phased together with SHAPEITv2 [61], and subsequently imputed with IMPUTE2 [62,63] to the merged UK10K and 1000G Phase 3 reference panel [64], containing ~91.3 million autosomal and chromosome X sites, from 6,285 samples.
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