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nif:beginIndex
  • 0 (xsd:integer)
nif:broaderContext
nif:endIndex
  • 567 (xsd:integer)
nif:isString
  • Criteria for excluding samples were as follows: i) concordance against Sequenom genotypes <90%; ii) for each pair of sample duplicates, exclude one with highest missingness; iii) sex inferred from genetic data different from stated sex; iv) sample call rate <95%; v) sample autosome heterozygosity rate >3 SDS from mean done separately for low (<1%) and high MAF(>1%) bins; vi) magnitude of intensity signal in both channels <90%; and vii) for each pair of related individuals (proportion of IBD (PI_HAT) >0.05), the individual with the lowest call rate was excluded.
rdf:type