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  • We introduce RNA-SeQC, a program which provides key measures of data quality. RNA-SeQC allows investigators to make informed decisions about sample inclusion in downstream analysis. Availability and implementation: See www.genepattern.org to run online, or www.broadinstitute.org/rna-seqc/ for a command line tool. Here we present RNA-SeQC, a metrics tool with application to two domains: experiment design and process optimization; and quality control prior to computational analysis. Implemented in Java, RNA-SeQC is platform independent and requires no installation.
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