sw_identity no_spellings spelling_variations alternative_names
https://www.wikidata.org/wiki/Q181596
17
PASW, PASW Statistic, PASW Statistics, SPSS, SPSS Dimensions, SPSS Statistics, SPSS statistics, Software Package for Statistical Analysis, Statistical Package for Social Science, Statistical Package for Social Sciences, Statistical Package for the Social Science, Statistical Package for the Social Sciences, Statistical Product and Service Solutions, Statistical Program for the Social Sciences, Statistical package for Social Sciences, statistical package for social science, statistical package for social sciences
https://www.wikidata.org/wiki/Q14116
9
Mac, Mac OS, Mac OS X, MacOS, MacOS X, MacOSX, Macintosh, OS-X, OSX
https://www.wikidata.org/wiki/Q286820
8
BLAST, BLASTp, Basic Local Alignment Search Tool, Blast, Blastn, Blastp, blast, blastn
https://www.wikidata.org/wiki/Q2003932
6
SAS, SAS Enterprise Guide, SAS Lab Pro, Statistical Analysis System, Statistical Analysis Systems, statistical analyses software
https://www.wikidata.org/wiki/Q2601695
6
EPI INFO, EPI Info, EPI info, Epi Info, Epi-Info, EpiInfo
https://www.nitrc.org/projects/wfu_pickatlas
5
Pickatlas, WFU pickatlas, WFU-Pickatlas, WFU-pick atlas, Wake Forest University PickAtlas
https://www.wikidata.org/wiki/Q11272
5
EXCEL, Excel, Microsoft Office Excel, Office Excel, excel
http://doi.org/10.1371/journal.pone.0078786
4
REMIT, ReMIT, ReMIT Client, ReMITclient
https://digitalinsights.qiagen.com/products-overview/discovery-insights-portfolio/analysis-and-visualization/qiagen-ipa
4
IPA, Ingenuity, Ingenuity Pathway Analyser, Ingenuity Pathway Analysis
https://www.ibm.com/products/structural-equation-modeling-sem
4
AMOS, Analysis of Moment Structures, SPSS AMOS, SPSS Amos
https://www.wikidata.org/wiki/Q1355082
4
GraphPad, PRISM, Prism, prism
https://www.wikidata.org/wiki/Q1406
4
Win, Window, Windows, windows
https://www.wikidata.org/wiki/Q169478
4
MATLAB, MATLB, MatLab, Matlab
https://www.wikidata.org/wiki/Q5382673
4
EpiData, EpiData Analysis, Epidata, epidata
http://doi.org/10.1186/gb-2006-7-4-r29
3
GENEMAPPER, GeneMapper, genemapper
https://beast.community
3
BEAST, Bayesian Evolutionary Analysis by Sampling Trees, beast
https://github.com/sccn/eeglab
3
EEGLAB, EEGLab, EEGlab
https://neurometrika.org/node/34
3
DARTEL, Diffeomorphic Anatomical Registration Through Exponentiated Lie Algebra, diffeomorphic anatomical registration through the exponentiated Lie algebra
https://www.mediacy.com/imageproplus
3
IPP, Image-Pro Plus, ImagePro+
https://www.wikidata.org/wiki/Q11239942
3
PRIMER, Primer, Primer3 Input
https://www.wikidata.org/wiki/Q1204300
3
STATA, Stata, stata
https://www.wikidata.org/wiki/Q1659584
3
Image J, Image-J, ImageJ
https://www.wikidata.org/wiki/Q18215965
3
Psychophysics Toolbox, Psychophysics toolbox, Psychtoolbox
https://www.wikidata.org/wiki/Q4049465
3
Sigma plot, SigmaPlot, Sigmaplot
https://www.wikidata.org/wiki/Q41566485
3
SPM, Statistical Parametric Mapping, statistical parametric mapping
https://www.wikidata.org/wiki/Q4792191
3
ARLEQUIN, Arlequin, Arlequín
https://www.wikidata.org/wiki/Q51715613
3
SHELXL, SHELXS, SHELXTL
https://www.wikidata.org/wiki/Q6716702
3
MLWiN, MLWin, MLwiN
https://www.wikidata.org/wiki/Q7388648
3
SAMtools, Samtools, samtools
https://www.wikidata.org/wiki/Q7602967
3
STATVIEW, StatView, Statview
https://www.wikidata.org/wiki/Q866737
3
Clustal, Clustal W, ClustalW
http://bioinfo.noble.org/PolyGenic_QTL
2
PEPIS, Pipeline for estimating EPIStatic genetic effects
http://bonsai.hgc.jp/~mdehoon/software/cluster
2
Cluster, Gene Cluster
http://calib.org/calib
2
CALIB, Calib
http://conifer.sourceforge.net
2
CoNIFER, Copy Number Inference from Exome Reads
http://coxpress.sf.net
2
CoXpress, coXpress
http://csg.sph.umich.edu/abecasis/mach
2
MACH, Mach
http://david.abcc.ncifcrf.gov
2
DAVID, Database for Annotation, Visualization and Integrated Discovery
http://genetics.bwh.harvard.edu/pph2
2
PolyPhen, Polyphen
http://jtreeview.sourceforge.net
2
TreeView, Treeview
http://marsbar.sourceforge.net
2
MarsBar, Marsbar
http://mdanalysis.googlecode.com
2
MDAnalysis, MDAnalysis molecular analysis toolkit
http://phagocytes.ca/miisr
2
Molecular Interactions in Super Resolution, Molecular Interactions in Super-Resolution
http://tree.bio.ed.ac.uk/software/tracer
2
TRACER, Tracer
http://vina.scripps.edu
2
Autodock Vina, Vina
http://www.abcc.ncifcrf.gov/wps/wps_index.php
2
WPS, WholePathwayScope
http://www.ensembl.org
2
ENSEMBLE, Ensembl
http://www.haplotype-reference-consortium.org
2
HRC, Haplotype Reference Consortium
http://www.ibmh.msk.su/PASS
2
PASS, Prediction of Activity Spectra for Substances
http://www.medyan.org
2
MEDYAN, Mechanochemical Dynamics of Active Networks
http://www.nitrc.org/projects/conn
2
CONN, conn
http://www.nrp.ac.uk/nrp-strategic-alliances/elsa/software/microchecker/
2
MICRO-CHECKER, MICROCHECKER
http://www.optflux.org
2
OptFlux, Optflux
http://www.optflux.org/cbfa
2
CBFA, Constraint-based Flux Analysis
http://www.pristionchus.org/3CPrimerDesign
2
3C Primer Design, 3PD
http://www.talairach.org/daemon.html
2
Tailarach Daemon, Talairach Daemon
http://www.thomaskoenig.ch/index.php/software/mapwin
2
MapWin, Mapwin
http://www.ub.edu/dnasp
2
DNAsp, DnaSP
http://www.viewpoint.fr/en/p/software/videotrack
2
VideoTrack, Videotrack
http://www1.montpellier.inra.fr/CBGP/software/Bottleneck/bottleneck.html
2
BOTTLENECK, Bottleneck
https://agenabio.com/products/massarray-system
2
MassARRAY Assay Design, MassARRAY Typer
https://bioconductor.org
2
BioConductor, Bioconductor
https://bioconductor.org/packages/FunciSNP
2
FunciSNP, Functional Identification of SNPs
https://bioconductor.org/packages/edgeR
2
EdgeR, edgeR
https://bitbucket.org/tguenther/read
2
READ, Relationship Estimation from Ancient DNA
https://cadd.gs.washington.edu
2
CADD, Combined Annotation Dependent Depletion
https://cran.r-project.org/package=lme4
2
lme4, lmer
https://cran.r-project.org/package=mice
2
Mice, mice
https://cran.r-project.org/package=nlme
2
NLME, nlme
https://cran.r-project.org/package=survival
2
Survival, survival
https://cran.r-project.org/package=vegan
2
Vegan, vegan
https://doi.org/10.1016/j.neuroimage.2010.12.012
2
SAMSCo, Statistical Analysis of Minimum cost path based Structural Connectivity
https://faculty.washington.edu/wijsman/software.shtml
2
PBAP, Pedigree-Based Analysis Pipeline
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FDT
2
FDT, FMRIB’s Diffusion Toolbox
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSLVBM
2
FSL-VBM, VBM
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MELODIC
2
MELODIC, Multivariate Exploratory Linear Optimized Decomposition into Independent Components
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/TBSS
2
TBSS, tract-based spatial statistics
https://genome.unc.edu/las
2
LAS, Large Average Submatricies
https://github.com/Chaste/Chaste
2
Cancer, Heart And Soft Tissue Environment, Chaste
https://github.com/UcarLab/QuIN
2
QuIN, Querying and visualizing Chromatin Interaction Networks
https://github.com/arq5x/bedtools2
2
BEDTools, bedtools
https://github.com/ddarriba/modeltest
2
MODELTEST, Modeltest
https://github.com/lh3/bwa
2
BWA, BWA-MEM
https://github.com/phoenixding/idrem
2
iDREM, interactive DREM
https://github.com/wmayner/pyphi
2
PyPhi, PyPi
https://ideas.repec.org/c/boc/bocode/s446602.html
2
ICE, ice
https://imaris.oxinst.com
2
IMARIS, Imaris
https://kimura.univ-montp2.fr/%7Erousset/Genepop.htm
2
GENEPOP, GenePop
https://mathworks.com/products/image.html
2
Image Processing Toolbox, image processing toolbox
https://mathworks.com/products/statistics.html
2
Statistical Toolbox, statistics toolbox
https://moleculardevices.com/products/axon-patch-clamp-system/acquisition-and-analysis-software/pclamp-software-suite
2
pCLAMP, pClamp
https://pstnet.com/products/e-prime
2
E-Prime, E-prime
https://pypi.org/project/psamm
2
PSAMM, Portable System for the Analysis of Metabolic Models
https://sourceforge.net/projects/ihcprofiler
2
IHC Profiler, IHC profiler
https://web.stanford.edu/group/pritchardlab/structure.html
2
STRUCTURE, Structure
https://www.bio-rad.com/en-de/product/image-lab-software?ID=KRE6P5E8Z
2
Image Lab, Image lab
https://www.chenomx.com
2
Chenomx, Chenomx NMR Suite
https://www.combosyn.com
2
CompuSin, CompuSyn
https://www.fluxus-engineering.com/sharenet.htm
2
NETWORK, Network
https://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html
2
Anatomy atlas, SPM anatomy toolbox
https://www.gsea-msigdb.org/gsea/index.jsp
2
GSEA, GSEA-P
https://www.hcup-us.ahrq.gov/toolssoftware/ccs/ccs.jsp
2
CCS, Clinical Classifications Software
https://www.ibm.com/products/spss-complex-samples
2
Complex Samples, Complex samples
https://www.kubios.com
2
Kubios, Kubios HRV
https://www.leica-microsystems.com/products/microscope-software/p/leica-application-suite
2
LAS AF, Leica Application Suite Advanced Fluorescence
https://www.med-associates.com/med-pc-v/
2
Med-PC, MedPC
https://www.microscope.healthcare.nikon.com/products/software/nis-elements
2
NIS, NIS-Elements
https://www.moleculardevices.com/products/additional-products/genepix-microarray-systems-scanners
2
GenePix, Genepix Pro
https://www.moleculardevices.com/products/cellular-imaging-systems/acquisition-and-analysis-software/metamorph-microscopy
2
MetaMorph, Metamorph
https://www.nitrc.org/projects/artifact_detect
2
ART, Artifact Rejection Toolbox
https://www.noldus.com/ethovision-xt
2
EthoVision, Ethovision
https://www.nucleics.com/DNA_sequencing_support/Trace_viewer_reviews/BioEdit
2
BIOEDIT, BioEdit
https://www.partek.com/partek-genomics-suite
2
Genomics Suite, Partek
https://www.qbaseplus.com
2
Qbase+, qBase
https://www.statmodel.com
2
MPlus, Mplus
https://www.wikidata.org/wiki/Q1026367
2
Scikit-learn, scikit-learn
https://www.wikidata.org/wiki/Q106381184
2
RevMan, Revman
https://www.wikidata.org/wiki/Q10920783
2
MRBAYES, MrBayes
https://www.wikidata.org/wiki/Q11255
2
MSOffice, Office
https://www.wikidata.org/wiki/Q11368
2
UNIX, Unix
https://www.wikidata.org/wiki/Q1258962
2
MAXQDA, MaxQDA
https://www.wikidata.org/wiki/Q1307239
2
OriginLab, OriginPro
https://www.wikidata.org/wiki/Q13574543
2
Igor Pro, Igor pro
https://www.wikidata.org/wiki/Q1504505
2
Java JRE, Java Runtime Environment
https://www.wikidata.org/wiki/Q1788435
2
STATISTICA, Statistica
https://www.wikidata.org/wiki/Q178940
2
g++, gcc
https://www.wikidata.org/wiki/Q18359288
2
PLINK, Plink
https://www.wikidata.org/wiki/Q1913760
2
MaxEnt, Maxent
https://www.wikidata.org/wiki/Q2005
2
JavaScript, Javascript
https://www.wikidata.org/wiki/Q206904
2
GNU R, R
https://www.wikidata.org/wiki/Q21850561
2
TopHat, Tophat
https://www.wikidata.org/wiki/Q25099639
2
Mothur, mothur
https://www.wikidata.org/wiki/Q251
2
JAVA, Java
https://www.wikidata.org/wiki/Q28444600
2
BioMart, Biomart
https://www.wikidata.org/wiki/Q2985668
2
Matplotlib, matplotlib
https://www.wikidata.org/wiki/Q3628244
2
ATLAS.ti, Atlas.ti
https://www.wikidata.org/wiki/Q364
2
GitHub, github
https://www.wikidata.org/wiki/Q3699942
2
Cytoscape, cytoscape
https://www.wikidata.org/wiki/Q3737246
2
FMRIB Software Library, FSL
https://www.wikidata.org/wiki/Q378530
2
PRAAT, Praat
https://www.wikidata.org/wiki/Q388
2
Linux, linux
https://www.wikidata.org/wiki/Q4118434
2
BioPython, Biopython
https://www.wikidata.org/wiki/Q41793788
2
Brain Voyager, BrainVoyager
https://www.wikidata.org/wiki/Q42478
2
PERL, Perl
https://www.wikidata.org/wiki/Q4751099
2
AFNI, ANFI
https://www.wikidata.org/wiki/Q47519550
2
GENELAND, Geneland
https://www.wikidata.org/wiki/Q5025484
2
CANTAB, Cambridge Neuropsychological Test Automated Battery
https://www.wikidata.org/wiki/Q513297
2
ArcGIS, ArcGis
https://www.wikidata.org/wiki/Q5427149
2
FSTAT, Fstat
https://www.wikidata.org/wiki/Q5535060
2
GIS, geographic information system
https://www.wikidata.org/wiki/Q5597064
2
InStat, Instat
https://www.wikidata.org/wiki/Q576474
2
GoldWave, Goldwave
https://www.wikidata.org/wiki/Q6719088
2
MUSCLE, Muscle
https://www.wikidata.org/wiki/Q6955723
2
NVivo, Nvivo
https://www.wikidata.org/wiki/Q7118292
2
PAUP, PAUP*
https://www.wikidata.org/wiki/Q7256288
2
PsychoPy, Psychopy
https://www.wikidata.org/wiki/Q8046870
2
Yahoo-BOSS, Yahoo-BOSS API
"ALPHASIM_01"
1
AlphaSim
"CELLQUEST_01"
1
CellQuest
"CHART_01"
1
Chart
"CIMSIM_01"
1
CIMSiM
"DATACAM_01"
1
Datacam
"DIGIPRO_01"
1
Digipro
"DRAEGER_EIT_DATA_ANALYSIS_TOOL_01"
1
Draeger EIT Data Analysis Tool
"EASY_RA1_EASY_RANDOMIZER_01"
1
EASY RA1 Easy Randomizer
"EXPERIMENT_CENTER_01"
1
Experiment Center
"EYELINK_API_01"
1
EyeLink API
"EYEVISION_01"
1
EyeVision
"GLOBALPARK_01"
1
Globalpark
"HABIT_2000_01"
1
Habit 2000
"HGF_01"
1
HGF
"IMAGELAB_01"
1
Imagelab
"IVIEW_X_01"
1
iView X
"LSM_IMAGING_01"
1
LSM imaging
"OOIBASE_01"
1
OOIBase
"SADABS_01"
1
SADABS
"SAINT_01"
1
SAINT
"SNAP_01"
1
SNAP
"TGAME_01"
1
TGAME
http://apps.cytoscape.org/apps/bisogenet
1
BisoGenet
http://apps.cytoscape.org/apps/mcode
1
MCODE
http://bejerano.stanford.edu/great
1
GREAT
http://bg.upf.edu/condel
1
Condel
http://bio.ifom-firc.it/NTFootPrinter
1
NemaFootPrinter
http://bio.informatics.iupui.edu/proteolens
1
ProteoLens
http://biocomputer.bio.cuhk.edu.hk/T3DB/T3_MM.php
1
T3_MM
http://bioconductor.org/packages/MutationalPatterns
1
MutationalPatterns
http://bioinf.wehi.edu.au/software/goseq
1
GOseq
http://bioinfo.unice.fr/ohm
1
OHM
http://biotools.nubic.northwestern.edu/OligoCalc.html
1
Oligo Calc
http://bowtie-bio.sourceforge.net/bowtie2
1
Bowtie
http://brainmap.co.uk
1
ICC toolbox
http://celest.mbb.rutgers.edu
1
CeleST
http://clovr.org
1
CloVR
http://code.google.com/p/biographer
1
biographer
http://code.google.com/p/pyms
1
PyMS
http://code.google.com/p/rna-star
1
STAR
http://comp-bio.anu.edu.au/bellerophon/bellerophon.pl
1
Bellerpheron
http://compbio.clemson.edu/DelPhi.php
1
DelPhi
http://consurf-hssp.tau.ac.il
1
ConSurf-HSSP
http://csg.sph.umich.edu/abecasis/Pedstats
1
PEDSTATS
http://csg.sph.umich.edu/abecasis/metal
1
METAL
http://ctg.cncr.nl/software/magma
1
MAGMA
http://ctrax.sourceforge.net
1
Ctrax
http://ctrax.sourceforge.net/fixerrors.html
1
FixErrors
http://david.niaid.nih.gov/david/ease.htm
1
Expression Analysis Systematic Explorer
http://doi.org/10.1371/journal.pcbi.1002380
1
DOGS
http://doi.org/10.1371/journal.pone.0091620
1
neurofeedback toolbox
http://epigraph.mpi-inf.mpg.de
1
EpiGRAPH
http://eutils.ncbi.nlm.nih.gov
1
Entrez Utilities Entrez Programming Utilities
http://familygenomics.systemsbiology.net/grab
1
GRAB
http://fcsb.njau.edu.cn/microsyn
1
MicroSyn
http://fim.uni-muenster.de
1
FIMTrack
http://flash.lakeheadu.ca/~rrempel/ecology
1
Patch Analyst
http://github.com/pughlab/bamgineer
1
Bamgineer
http://hmmer.janelia.org
1
HMMER
http://homepages.ed.ac.uk/pmckeigu/software/admixmap
1
ADMIXMAP
http://hpc.ilri.cgiar.org/beca/bioinfo/convert.html
1
convert
http://hvsimage.com
1
HVS Image
http://indy.cs.concordia.ca/auto
1
AUTO
http://infecepi.unizar.es/pages/ratio/soft_uk.htm
1
WinEpiscope
http://intergrowth21.ndog.ox.ac.uk
1
Newborn Size Application
http://isisweb.org/touch_stat_pgm.htm
1
TouchStat
http://jvsmicroscope.uta.fi/immunoratio
1
Immunoratio
http://kobas.cbi.pku.edu.cn
1
KOBAS
http://legrosmathi.eu/skeeterbuster
1
Skeeter Buster
http://liulab.dfci.harvard.edu/MACS
1
MACS
http://lpg.nci.nih.gov
1
SNPdetector
http://mbb-team.github.io/VBA-toolbox/
1
VBA
http://meme.sdsc.edu
1
FIMO
http://mib.helsinki.fi
1
Microscopy Image Browser
http://mirdb.org
1
miRDB
http://msaprobs.sourceforge.net
1
MSAProbs
http://mutationassessor.org
1
MutationAssessor
http://neurocics.udd.cl/LANtoolbox.html
1
LAN toolbox
http://novosnp.bioinf.be
1
NovoSNP
http://olisweb.com/olisweb_old/Olis-Software.html
1
GlobalWorks
http://ontofox.hegroup.org
1
OntoFox
http://openmeeg.github.io
1
openMEEG
http://pathomx.org
1
Pathomx
http://penncnv.openbioinformatics.org/en/latest
1
PennCNV
http://pep2path.sourceforge.net
1
Pep2Path
http://prody.csb.pitt.edu
1
ProDy
http://prtools.tudelft.nl
1
PRTools
http://psychtoolbox.org/docs/EyelinkToolbox
1
Eyelink Toolbox
http://psychtoolbox.org/docs/Quest
1
QUEST
http://pyrotagger.jgi-psf.org
1
PyroTagger
http://qtlcap.ed.ac.uk
1
QTL Express
http://rdp.cme.msu.edu
1
RDP Classifier
http://repeat.biol.ucy.ac.cy/lcr-exxxplorer
1
LCR-eXXXplorer
http://rseqc.sourceforge.net
1
RSeQC
http://sailing.cs.cmu.edu/Drosophila_ISH_images
1
GINI
http://sfu-compbio.github.io/mrsfast
1
mrsFAST
http://smart.emblheidelberg.de
1
SMART
http://sourceforge.net/projects/famseq
1
FamSeq
http://sourceforge.net/projects/lamina
1
LAMINA
http://stephenslab.uchicago.edu/phase/download.html
1
PHASE
http://strep-microarray.sbs.surrey.ac.uk/RankProducts
1
RankProdIt
http://subread.sourceforge.net
1
Subread
http://support.illumina.com/sequencing/sequencing_software/casava.html
1
CASAVA
http://sysbio.rnet.missouri.edu/multicom_toolbox
1
MSACompro
http://teacher.bmc.uu.se/CRIMAP/Crimap/wwwversn.html
1
Crimap
http://tools.thermofisher.com/content/sfs/manuals/Man-XCALI-97194-BioWorks-331-SP1-User-ManXCALI97194-B-EN.pdf
1
Bioworks
http://trackvis.org
1
TrackVis
http://varscan.sourceforge.net
1
VarScan
http://vcftools.sourceforge.net
1
vcftools
http://visant.bu.edu
1
VisANT
http://visualizlab.org/rulebender
1
RuleBender
http://webs.uvigo.es/acraaj/GenomePop.htm
1
GenomePop
http://whitelab.biology.dal.ca/SOCPROG/social.htm
1
SOCPROG
http://www.accelrys.com/dstudio/ds_viewer
1
DS ViewerPro
http://www.actigraphy.respironics.com/solutions/actiware
1
Actiware
http://www.adept.net.au/software/mediacy/ImagePro/scopePro.shtml
1
Scope-Pro
http://www.aqua.stir.ac.uk/rep-gen/Downloads.html
1
FAP
http://www.arringtonresearch.com/viewpoint.html
1
ViewPoint
http://www.atgc-montpellier.fr/phyml
1
PhyML
http://www.babyvoc.org/IVICT.html
1
IVICT
http://www.baseclear.com/bioinformatics-tools
1
SSPACE-LongRead
http://www.binarybottle.com/mindboggle.html
1
Mindboggle
http://www.bio.utexas.edu/faculty/antisense/garli/Garli.html
1
GARLI
http://www.bioinformatics.sussex.ac.uk/SHARP2
1
SHARP2
http://www.bionut.ki.se/users/pesv/podbat
1
Podbat
http://www.bioportal.uio.no
1
Bioportal
http://www.brainvoyager.com/products/brainvoyagerqx.html
1
BVQX
http://www.bristol.ac.uk/cmm/software/realcom
1
REALCOM-IMPUTE
http://www.bristol.ac.uk/cmm/software/runmlwin
1
runmlwin
http://www.broadinstitute.org/rna-seqc
1
RNA-SeQC
http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/v-phaser-2
1
V-Phaser
http://www.brylinski.org/ematchsite
1
eMatchSite
http://www.cbs.dtu.dk/services/MuPeXI
1
MuPeXI
http://www.cbs.dtu.dk/services/NetMHCpan
1
NetMHCpan
http://www.cbs.dtu.dk/services/SignalP
1
SignalP
http://www.cellxpress.org
1
cellXpress
http://www.cgbayesnets.com
1
CGBayesNets
http://www.cgl.ucsf.edu/chimera
1
Chimera
http://www.conoserver.org
1
ConoMass
http://www.csbio.unc.edu/rs
1
RNA-Skim
http://www.cse.lehigh.edu/~chen/software.htm
1
VASP-E
http://www.cytobank.org
1
Cytobank
http://www.die.upm.es/im/archives/DCEurLAB
1
DCE@urLAB
http://www.dissect.ed.ac.uk
1
DISSECT
http://www.ebi.ac.uk/thornton-srv/software/PoreWalker
1
PoreWalker
http://www.ee.ic.ac.uk/hp/staff/dmb/voicebox/voicebox.html
1
voicebox
http://www.euroqol.org/eq-5d-products/eq-5d-5l.html
1
EQ-5D calculator
http://www.fieldgenetics.com/pages/aboutCervus_Overview.jsp
1
Cervus
http://www.figurej.org
1
FigureJ
http://www.funrich.org
1
FunRich
http://www.github.com/FragIt
1
FragIt
http://www.gqinnovationcenter.com/services/bioinformatics/flexarray
1
FlexArray
http://www.ifi.uio.no/bioinf/Projects/ASCAT
1
ASCAT
http://www.imperial.ac.uk/people/l.coin
1
cnvHap
http://www.inxightfedsys.com/pdfs/LinguistX_FinalWeb.pdf
1
Inxight
http://www.iop.kcl.ac.uk/IoP/Departments/PsychMed/GEpiBSt/software.stm
1
GENECOUNTING
http://www.korbel.embl.de/software.html
1
DELLY
http://www.ledalab.de
1
Ledalab
http://www.lillo.org.ar/phylogeny/VIP
1
VIP
http://www.macvide.com/Macvide_FlashVideo_Converter
1
MacVide
http://www.mh-hannover.de/kliniken/radiologie/str_04.html
1
CT-Expo
http://www.microrna.org
1
microRNA
http://www.mtifwb.com
1
RIU
http://www.neuroexplorer.com
1
NeuroExplorer
http://www.novocraft.com/products/novoalign
1
Novoalign
http://www.oege.org/software/cubex
1
CubeX
http://www.okazolab.com
1
EventIDE
http://www.phagocytes.ca/miisr
1
MIiSR
http://www.phosphortholog.com
1
PhosphOrtholog
http://www.purl.oclc.org/estimates
1
EstimateS
http://www.restfmri.net/forum/REST_V1.8
1
REST
http://www.rummlab.com.au
1
RUMM
http://www.sdmtoolbox.org
1
SDMtoolbox
http://www.singlecaseresearch.org/calculators/pabak-os
1
PABAK-OS calculator
http://www.softberry.com/berry.phtml
1
FGENESB
http://www.spatialecology.com/gme
1
geo-spatial modeling environment
http://www.spatialecology.com/htools
1
Hawth's analysis tools for ArcGis
http://www.sph.umich.edu/csg/abecasis/Merlin
1
MERLIN
http://www.techilatechnologies.com
1
Techila Technologies
http://www.touptek.com/product/showproduct.php?lang=en&id=103
1
ToupView
http://www.transportmodel.eu
1
TRANS-TOOLS
http://www.treedyn.org
1
TreeDyn
http://www.umass.edu/landeco/research/fragstats/fragstats.html
1
Fragstats
http://www.ut-radiology.umin.jp/people/masutani/dTV/dTV_frame-e.htm
1
DTV.II SR
http://www.vcclab.org/lab/alogps
1
Alogps
http://www.vislab.ucl.ac.uk/cogent.php
1
Cogent
http://www.vislab.ucl.ac.uk/cogent_2000.php
1
Cogent 2000
http://www.volume-one.org
1
Volume 1
http://www.vsh.com/products/mflt
1
ModFit
http://www.wakayama-u.ac.jp/~kawahara/STRAIGHTdemo
1
STRAIGHT
http://www.zeiss.com/microscopy/int/products/microscope-software/axiovision
1
Axio Vision
http://www0.cs.ucl.ac.uk/staff/g.ridgway/vbm/get_totals.m
1
get_totals
http://www1.montpellier.inra.fr/CBGP/diyabc
1
DIYABC
http://www2.umdnj.edu/lilabweb/publications/AccuTyping.html
1
AccuTyping
http://www3.psych.purdue.edu/~willia55/Announce/cyberball.htm
1
Cyberball
http://www4a.biotec.or.th/GI/tools/metasel
1
MetaSel
http://wwwold.fi.isc.cnr.it/users/thomas.kreuz/sourcecode.html
1
SPIKE-dist
http://zhoulab.usc.edu/Hi-Corrector
1
Hi-Corrector
https://EconPapers.repec.org/RePEc:boc:bocode:s457279
1
ZSCORE06
https://actigraphcorp.com/support/software/actilife
1
ActiLife
https://afni.nimh.nih.gov/Suma
1
SUMA
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dBandpass.html
1
3dBandpass
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dClustSim.html
1
3dClustsim
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dDeconvolve.html
1
3dDeconvolve
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dDespike.html
1
3dDespike
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dDetrend.html
1
3dDetrend
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dFDR.html
1
3dFDR
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dFWHMx.html
1
3dFWHMx
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dmaskave.html
1
3dmaskave
https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dttest++.html
1
3dttest+ +
https://afni.nimh.nih.gov/pub/dist/doc/program_help/MapIcosahedron.html
1
MapIcosahedron
https://afni.nimh.nih.gov/pub/dist/doc/program_help/waver.html
1
waver
https://alkesgroup.broadinstitute.org/BOLT-LMM
1
BOLT-LMM
https://amaral.northwestern.edu/resources/software/netcarto
1
netcarto
https://ambermd.org/AmberTools.php
1
AMBERTOOLS
https://anaconda.org/bioconda/pycluster
1
Pycluster
https://apps.cytoscape.org/apps/cluego
1
ClueGO
https://apps.cytoscape.org/apps/clustermaker
1
clusterMaker
https://apps.cytoscape.org/apps/reactomefis
1
Reactome
https://atgu.mgh.harvard.edu/plinkseq
1
PLINK/SEQ
https://beast.community/logcombiner
1
LogCombiner
https://bioconductor.org/packages/ChAMP
1
ChAMP
https://bioconductor.org/packages/DESeq
1
DESeq
https://bioconductor.org/packages/DESeq2
1
DESeq2
https://bioconductor.org/packages/DriverNet
1
DriverNet
https://bioconductor.org/packages/GeneOverlap
1
GeneOverlap
https://bioconductor.org/packages/MSstats
1
MSstats
https://bioconductor.org/packages/Rhtslib
1
Rhtslib
https://bioconductor.org/packages/SomaticSignatures
1
SomaticSignatures
https://bioconductor.org/packages/hgu95av2
1
hgu95av2
https://bioconductor.org/packages/hu6800.db
1
hu6800
https://bioconductor.org/packages/illuminaio
1
illuminaio
https://bioconductor.org/packages/scPipe
1
scPipe
https://bioconductor.org/packages/tximport
1
tximport
https://bioinfogp.cnb.csic.es/tools/venny
1
Venny
https://bioinformatics.mdanderson.org/public-software/tanric
1
TANRIC
https://biology-assets.anu.edu.au/GenAlEx
1
GenAlEx
https://bitbucket.org/ipk_bit_team/bioescorte-suggestion
1
LAILAPS-QSM
https://bmsr.usc.edu/software/adapt
1
ADAPT
https://bruker-daltonics-biotools.software.informer.com/3.0
1
BioTools
https://cbr.jic.ac.uk/threadmapper
1
THREaD Mapper Studio
https://cibersort.stanford.edu
1
CIBERSORT
https://code.google.com/archive/p/lagrange
1
LAGRANGE
https://code.google.com/archive/p/quickpalm
1
QuickPALM
https://compumedicsneuroscan.com/tag/scan
1
Scan
https://cran.r-project.org/package=Amelia
1
AmeliaView
https://cran.r-project.org/package=Epi
1
Epi
https://cran.r-project.org/package=MCMCglmm
1
MCMCglmm
https://cran.r-project.org/package=OptimalCutpoints
1
OptimalCutpoints
https://cran.r-project.org/package=R2WinBUGS
1
R2WinBUGS
https://cran.r-project.org/package=ROCR
1
ROCR
https://cran.r-project.org/package=Rcpp
1
Rcpp
https://cran.r-project.org/package=Rtsne
1
Rtsne
https://cran.r-project.org/package=aLFQ
1
aLFQ
https://cran.r-project.org/package=bipartite
1
bipartite
https://cran.r-project.org/package=bnlearn
1
bnlearn
https://cran.r-project.org/package=boot
1
boot
https://cran.r-project.org/package=bootES
1
BootES
https://cran.r-project.org/package=car
1
car
https://cran.r-project.org/package=caret
1
caret
https://cran.r-project.org/package=clam
1
clam
https://cran.r-project.org/package=dcGOR
1
dcGOR
https://cran.r-project.org/package=dismo
1
dismo
https://cran.r-project.org/package=dlnm
1
dlnm
https://cran.r-project.org/package=eRm
1
eRM
https://cran.r-project.org/package=epiR
1
EpiR
https://cran.r-project.org/package=epitools
1
EpiTools
https://cran.r-project.org/package=fmsb
1
fmsb
https://cran.r-project.org/package=gdata
1
gdata
https://cran.r-project.org/package=glmnet
1
glmnet
https://cran.r-project.org/package=gplots
1
gplots
https://cran.r-project.org/package=gtools
1
gtools
https://cran.r-project.org/package=h2o
1
H2O R interface
https://cran.r-project.org/package=irr
1
irr
https://cran.r-project.org/package=lattice
1
lattice
https://cran.r-project.org/package=ltm
1
ltm
https://cran.r-project.org/package=mRMRe
1
mRMRe
https://cran.r-project.org/package=mclust
1
adjustedRandIndex
https://cran.r-project.org/package=mgcv
1
mgcv
https://cran.r-project.org/package=mitml
1
mitml
https://cran.r-project.org/package=ordinal
1
ordinal
https://cran.r-project.org/package=pROC
1
pROC
https://cran.r-project.org/package=plotrix
1
plotrix
https://cran.r-project.org/package=psych
1
psych
https://cran.r-project.org/package=qtl
1
R/Qtl
https://cran.r-project.org/package=quantregForest
1
quantregForest
https://cran.r-project.org/package=raster
1
raster
https://cran.r-project.org/package=rgdal
1
rgdal
https://cran.r-project.org/package=rioja
1
rioja
https://cran.r-project.org/package=rjags
1
rjags
https://cran.r-project.org/package=rms
1
rms
https://cran.r-project.org/package=rpart
1
rpart
https://cran.r-project.org/package=rstan
1
Rstan
https://cran.r-project.org/package=sensitivity
1
sensitivity
https://cran.r-project.org/package=sourceR
1
sourceR
https://cran.r-project.org/package=survC1
1
survC1
https://cran.r-project.org/package=survminer
1
survminer
https://cran.r-project.org/package=tidyr
1
tidyr
https://cran.r-project.org/package=tnet
1
tnet
https://cran.r-project.org/src/contrib/Archive/gtx
1
GTX
https://cran.r-project.org/src/contrib/Archive/mixer
1
Mixer
https://dataanalysis.qiagen.com/pcr/documents/RT2ProfilerDataAnalysisHandbook.pdf
1
RT2 Profiler PCR Array Data analysis
https://david.ncifcrf.gov/content.jsp?file=functional_annotation.html
1
Functional Annotation Tool
https://dceg.cancer.gov/tools/design/pga
1
PGA
https://desktop.arcgis.com/en/arcobjects/latest/net/webframe.htm#PerformingAnalysisWithSpatialAnalyst.htm
1
Spatial Analyst
https://doi.org/10.1016/j.neuroimage.2009.09.069
1
Learning Embeddings Atlas Propagation
https://doi.org/10.1086/590395
1
REGRESSIONv2.m
https://doi.org/10.1093/bioinformatics/btp497
1
GRIMP
https://doi.org/10.1093/bioinformatics/bts015
1
gpu-lasso
https://doi.org/10.1186%2F2049-2618-1-6
1
CloVR-ITS
https://doi.org/10.1371/journal.pntd.0006490.s001
1
RabiesEcon
https://doi.org/10.25386/genetics.10266425
1
CNVmap
https://droog.gs.washington.edu/polyphred
1
PolyPhred
https://enketo.org
1
Enketo
https://eprint.ncl.ac.uk/6053
1
C2
https://faculty.washington.edu/browning/beagle/beagle.html
1
BEAGLE
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/DualRegression
1
dual regression
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FAST
1
FMRIB's Automated Segmentation Tool
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIRST
1
FMRIB’s Integrated Registration and Segmentation Tool
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX
1
FMRIB's ICA-based X-noiseifier
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT
1
FLIRT
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FNIRT
1
FNIRT
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslView
1
FSLView
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Randomise
1
threshold-free cluster enhancement
https://gaow.github.io/genetic-analysis-software/1/2ld
1
2LD
https://gaow.github.io/genetic-analysis-software/c/clump
1
CLUMP
https://gatk.broadinstitute.org
1
Genome Analysis Toolkit
https://gazeintelligence.com/smi-software-download
1
BeGaze
https://genorm.cmgg.be
1
GeNorm
https://github.com//bionomicron/Redirector.git
1
Redirector
https://github.com/ANTsX/ANTs
1
Advanced Normalization Tools
https://github.com/Amber-MD/cpptraj
1
CPPTRAJ
https://github.com/BrainDynamicsUSYD/nftsim
1
NFTsim
https://github.com/COMBINE-lab/Salmon
1
Salmon
https://github.com/CellProfiler
1
CellProfiler
https://github.com/DReichLab/EIG
1
SMARTPCA
https://github.com/FelixKrueger/TrimGalore
1
Trim Galore!
https://github.com/Grice-Lab/AlignerBoost
1
AlignerBoost
https://github.com/Insubric/fire-calculator
1
Fire Weather Indices Calculator
https://github.com/LLNL/sundials
1
SUNDIALS
https://github.com/MathCancer/PhysiCell
1
PhysiCell
https://github.com/PacificBiosciences/blasr
1
BLASR
https://github.com/PathVisio/PathVisioRPC
1
PathVisioRPC
https://github.com/PyMVPA/PyMVPA
1
PyMVPA
https://github.com/RuleWorld/bionetgen
1
BioNetGen
https://github.com/Taming-the-BEAST/SCOTTI-Tutorial
1
SCOTTI
https://github.com/Washington-University/HCPpipelines/tree/master/MSMAll
1
MSM-All
https://github.com/andrewssobral/tensor_toolbox
1
Tensor Toolbox
https://github.com/arq5x/gemini
1
GEMINI
https://github.com/batxes/4Cin
1
4Cin
https://github.com/broadinstitute/picard
1
Picard
https://github.com/brwnj/bcl2fastq
1
bcl2fastq2
https://github.com/bwallace/OpenMeta-analyst-
1
Open Meta-Analyst
https://github.com/choderalab/ensembler
1
Ensembler
https://github.com/christbald/magpie
1
MAGPIE
https://github.com/cit-bioinfo/consensusMIBC
1
consensus MIBC
https://github.com/cole-trapnell-lab/cufflinks
1
Cufflinks
https://github.com/danlwarren/ENMTools
1
ENMtools
https://github.com/dcm4che/dcm4chee-arc-light/
1
dcm4chee
https://github.com/ding-lab/msisensor
1
MSIsensor
https://github.com/encore-similarity/encore
1
ENCORE
https://github.com/etal/cnvkit
1
CNVkit
https://github.com/gburleigh/MatrixConverter
1
MatrixConverter
https://github.com/genome/bam-readcount
1
bam-readcount
https://github.com/gilbertbigras/Ki67
1
Ki67 Vv
https://github.com/guigolab/ggsashimi
1
ggsashimi
https://github.com/h2oai/h2o-3/tree/master/h2o-r/ensemble
1
h2oEnsemble
https://github.com/hddm-devs/hddm
1
HDDM
https://github.com/hmgu-itg/metacarpa
1
METACARPA
https://github.com/htseq/htseq
1
HTSeq
https://github.com/ijpb/MorphoLibJ
1
MorphoLibJ
https://github.com/joblib/joblib
1
joblib
https://github.com/kingsfordgroup/sailfish
1
Sailfish
https://github.com/krm15/ACME
1
ACME
https://github.com/librosa/librosa
1
Librosa
https://github.com/lumiratos/mafco
1
MAFCO
https://github.com/marcelm/cutadapt
1
cutadapt
https://github.com/mikessh/mageri
1
MAGERI
https://github.com/mikessh/vdjtools
1
VDJtools
https://github.com/mlbendall/telescope
1
Telescope
https://github.com/myourshaw/vax
1
VAX
https://github.com/najoshi/sickle
1
sickle
https://github.com/ncbi/pgap
1
Prokaryotic Genomes Automatic Annotation Pipeline
https://github.com/opencobra/cobrapy
1
COBRApy
https://github.com/pdollar/toolbox/blob/master/videos/behaviorAnnotator.m
1
Behavior Annotator
https://github.com/rajewsky-lab/mirdeep2
1
Mirdeep2
https://github.com/rambaut/figtree
1
Fig Tree
https://github.com/reedacartwright/spagedi
1
SPAGeDI
https://github.com/rmcelreath/rethinking/blob/master/R/map2stan.r
1
map2stan
https://github.com/rrueedi/metabomatching
1
Metabomatching
https://github.com/ruolin/strawberry
1
Strawberry
https://github.com/samtools/bcftools
1
BCFtools
https://github.com/sanger-pathogens/Artemis
1
Artemis
https://github.com/sbrg/cobrame
1
COBRAme
https://github.com/scimemia/M-Track
1
M-Track
https://github.com/translationalneuromodeling/tapas
1
TAPAS
https://github.com/ufz/cvode
1
CVODE
https://github.com/usadellab/Trimmomatic
1
Trimmomatic
https://github.com/veg/datamonkey-js
1
Datamonkey
https://github.com/veg/idepi
1
IDEPI
https://github.com/vhsvhs/phylobot-django
1
PhyloBot
https://github.com/zeeev/wham
1
Wham
https://gvs.gs.washington.edu/GVS150
1
Genome Variation Server
https://hydra.usc.edu/gxe
1
Quanto
https://ideas.repec.org/c/boc/bocode/s446201.html
1
metareg
https://ideas.repec.org/c/boc/bocode/s457354.html
1
punafcc
https://jexpress.bioinfo.no/site
1
J-Express
https://jp.support.illumina.com/sequencing/sequencing_software/real-time_analysis_rta.html
1
RTA
https://kim.bio.upenn.edu/software/pivot.shtml
1
PIVOT
https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html
1
SHAPEITv
https://mathgen.stats.ox.ac.uk/genetics_software/snptest/snptest.html
1
SNPTEST
https://mathgen.stats.ox.ac.uk/impute/impute_v2.html
1
IMPUTE
https://mathworks.com/products/curvefitting.html
1
Curve Fitting Toolbox
https://mathworks.com/products/image-acquisition.html
1
Image Acquisition Toolbox
https://mitsar-eeg.com/eeg-system-solutions/wineeg-research-software
1
WinEEG
https://neuro.debian.net
1
NeuroDebian
https://palaeo-electronica.org/2001_1/past/issue1_01.htm
1
PAST
https://people.virginia.edu/~wc9c/KING
1
KING
https://perso.unifr.ch/roberto.caldara/index.php?page=3
1
iMap
https://peterbeerli.com/migrate-html5
1
migrate
https://phylopythias.bifo.helmholtz-hzi.de
1
PhylopythiaS
https://pro.arcgis.com/en/pro-app/latest/tool-reference/spatial-statistics/an-overview-of-the-spatial-statistics-toolbox.htm
1
Spatial Statistics
https://proteomics.broadinstitute.org
1
Spectrum Mill
https://pypi.org/project/nilearn
1
Nilearn
https://pypi.org/project/pycdf
1
Pycdf
https://pypi.org/project/pyradiomics
1
PyRadiomics
https://rast.nmpdr.org
1
Rapid Annotation using Subsystem Technology
https://remoteproctor.com
1
Remote Proctor Now
https://rome.phri.ca/files/idatafax
1
iDataFax
https://rosenberglab.stanford.edu/clumpp.html
1
CLUMPP
https://rosenberglab.stanford.edu/distruct.html
1
DISTRUCT
https://sbalzarini-lab.org/?q=downloads/stochastic_chemical_net
1
pSSAlib
https://scholar.princeton.edu/gitailab/psicic
1
PSICIC
https://sciex.com/products/software/analyst-software
1
Analyst
https://sift.bii.a-star.edu.sg
1
Sift
https://sites.google.com/a/wolkon.com/gps-sample
1
GPS Sample
https://sites.google.com/site/bctnet
1
Brain Connectivity Toolbox
https://sites.google.com/site/fukunagatsu/software/capr
1
CapR
https://sites.google.com/site/mtphyl
1
mtPhyl
https://sites.google.com/site/neuromapsoftware
1
NeuroMap
https://sites.stat.washington.edu/thompson/Genepi/MORGAN/Morgan.shtml
1
MORGAN
https://snp.gs.washington.edu/SeattleSeqAnnotation
1
Seattle Seq
https://softgenetics.com/mutationSurveyor.php
1
Mutation Surveyor
https://software.broadinstitute.org/cancer/cga/mutect
1
MuTect
https://software.broadinstitute.org/cancer/cga/polysolver
1
Polysolver
https://sourceforge.net/projects/andestools
1
ANDES
https://sourceforge.net/projects/ibdws
1
IBDWS
https://sourceforge.net/projects/matcont
1
MatCont
https://sourceforge.net/projects/skewer
1
skewer
https://statgen.bitbucket.io/xhmm
1
XHMM
https://stella-emu.github.io
1
Stella
https://support.illumina.com/sequencing/sequencing_software/igenome.html
1
iGenomes
https://tgvaughan.github.io/MultiTypeTree
1
MultiTypeTree
https://tlocoh.r-forge.r-project.org
1
T-LoCoH
https://tools.thermofisher.com/content/sfs/brochures/D01575~.pdf
1
iTeva
https://tools.thermofisher.com/content/sfs/brochures/cms_039770.pdf
1
Genescan
https://toppgene.cchmc.org/enrichment.jsp
1
ToppFun
https://training.cochrane.org/online-learning/core-software-cochrane-reviews/revman
1
Review Manager
https://users.fmrib.ox.ac.uk/~behrens/fdt_docs/fdt_dtifit.html
1
DTIFit
https://visiopharm.com
1
Visiopharm
https://vpixx.com
1
VPixx
https://www.3ds.com/products-services/biovia/products/data-science/biovia-insight
1
InsightII
https://www.acsu.buffalo.edu/~yijunsun/lab/ESPRIT-Forest.html
1
ESPRIT-Forest
https://www.adaptivebiotech.com/immunoseq
1
immunoSEQ Analyzer
https://www.agilent.com/en/product/automated-electrophoresis/bioanalyzer-systems
1
Bioanalyzer
https://www.agilent.com/en/product/software-informatics/mass-spectrometry-software/data-acquisition/acquisition-for-lc-ms
1
MassHunter Acquisition
https://www.agilent.com/en/product/software-informatics/mass-spectrometry-software/data-analysis/mass-profiler-professional-software
1
Mass Profiler Professional
https://www.agilent.com/en/product/software-informatics/mass-spectrometry-software/data-analysis/qualitative-analysis
1
MassHunter Qualitative Analysis
https://www.altmetric.com/products/free-tools/bookmarklet
1
Altmetric
https://www.andrew.cmu.edu/user/bjones
1
traj
https://www.ansys.com/products/fluids
1
CFD
https://www.arb-silva.de/aligner
1
SILVA SINA
https://www.attivio.com
1
Attivio
https://www.bdbiosciences.com/en-us/instruments/research-instruments/research-software/flow-cytometry-acquisition/facsdiva-software
1
BD FACSDiva
https://www.bdbiosciences.com/en-us/instruments/research-instruments/research-software/flow-cytometry-acquisition/facsuite-software
1
FACSuite
https://www.beast2.org/treeannotator
1
TreeAnnotator
https://www.bio-rad.com/en-de/product/myiq2-two-color-real-time-pcr-detection-system
1
MyIQ
https://www.bio-rad.com/en-de/product/quantity-one-1-d-analysis-software
1
Quantity One
https://www.bio-rad.com/en-de/sku/1709753-iq5-optical-system-software
1
iQ5 Optical system
https://www.bio-rad.com/en-us/product/bio-plex-manager-software-standard-edition
1
Bioplex Manager
https://www.bio-rad.com/webroot/web/pdf/lsr/literature/Bulletin_5400.pdf
1
ProteomeWeaver
https://www.bioconductor.org/packages/RTN
1
RTN
https://www.bioconductor.org/packages/edge
1
edge
https://www.bioconductor.org/packages/survcomp
1
survcomp
https://www.biodiscovery.com/imagene
1
ImaGene
https://www.biopac.com/product/acqknowledge-software
1
AcqKnowledge
https://www.brainproducts.com/downloads.php?kid=2
1
Brain Vision Recorder
https://www.brainproducts.com/downloads.php?kid=9
1
Brain Vision Analyzer
https://www.broadinstitute.org/birdsuite
1
Birdseye
https://www.bruker.com/de/products-and-solutions/mr/nmr-software/topspin.html
1
TopSpin
https://www.bruker.com/en/products-and-solutions/mass-spectrometry/maldi-tof/autoflex-max.html
1
Flex Analysis
https://www.bruker.com/en/services/training/magnetic-resonance/nmr-trainings/germany-switzerland/amix-software.html
1
AMIX
https://www.chem.gla.ac.uk/~louis/software/ortep
1
ORTEP
https://www.cloudresearch.com
1
TurkPrime
https://www.cortechs.ai/products/neuroquant
1
NeuroQuant
https://www.cytivalifesciences.com/imagingsoftware
1
ImageQuant TL
https://www.datasci.com/products/software/dataquest-art
1
Dataquest
https://www.dcm4che.org
1
dcm4che
https://www.emka.fr/product/iox2-software
1
Iox
https://www.ensembl.org/info/docs/tools/vep
1
Variant Effect Predictor
https://www.experimetrix.com
1
Experimetrix
https://www.fei.com/software/visilog
1
Visilog
https://www.fil.ion.ucl.ac.uk/spm/toolbox/fieldmap
1
Fieldmap
https://www.fon.hum.uva.nl/praat/manual/Articulatory_synthesis.html
1
articulatory synthesizer
https://www.gabamrs.com
1
Gannet
https://www.guimaraes.bio.br/soft.html
1
Aninhado
https://www.heka.com/downloads/downloads_main.html#down_patchmaster
1
Patchmaster
https://www.hyphy.org
1
HyPhy
https://www.ibm.com/products/spss-advanced-statistics
1
Advanced Model
https://www.icrea.cat/Web/OtherSectionViewer.aspx?key=485&titol=Software:Qxpak
1
qxpak
https://www.illumina.com/Documents/products/datasheets/datasheet_beadstudio.pdf
1
BeadStudio
https://www.illumina.com/Documents/products/technotes/technote_gencall_data_analysis_software.pdf
1
GenCall
https://www.illumina.com/techniques/microarrays/array-data-analysis-experimental-design/genomestudio.html
1
GenomeStudio
https://www.imsc.res.in/~rsidd/phylogibbs
1
PhyloGibbs
https://www.imsc.res.in/~rsidd/phylogibbs-mp
1
PhyloGibbs-MP
https://www.ittvis.com/idl
1
IDL
https://www.ittvis.com/idlvm
1
IDL Virtual Machine
https://www.jurgott.org/linkage/SLINK.htm
1
SLINK
https://www.jwatcher.ucla.edu
1
JWatcher
https://www.l3harrisgeospatial.com/Software-Technology/ENVI
1
ENVI
https://www.labtools.us/sequence-scanner
1
Sequence Scanner
https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls
1
LAS X
https://www.luminexcorp.com/luminex-100200
1
Luminex 100 ™ IS
https://www.mbfbioscience.com/stereo-investigator
1
Stereo investigator
https://www.medizin.uni-tuebingen.de/das-klinikum/einrichtungen/kliniken/kinderklinik/kinderheilkunde-iii/forschung-iii/software
1
LI-toolbox
https://www.meta-analysis.com
1
Comprehensive Meta-Analysis
https://www.micropticsl.com/products/sperm-class-analyzer-casa-system
1
Sperm Class Analyzer
https://www.microsoft.com/download/details.aspx?id=21
1
NET
https://www.millisecond.com
1
Inquisit
https://www.mindmedia.com/downloads
1
Biotrace
https://www.mindmedia.com/losungen/qeeg/sloreta
1
sLORETA
https://www.montana.edu/kalinowski/software/ml-relate
1
MLRELATE
https://www.motic.com/As_microscope_software_a/product_236.html
1
Digilab
https://www.mrcholland.com/technology/software/coffalyser-net
1
Coffalyser.NET
https://www.msg.chem.iastate.edu/gamess
1
GAMESS
https://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/index.cgi#bewith
1
BeWith
https://www.ncbi.nlm.nih.gov/tools/primer-blast
1
Primer-BLAST
https://www.neurobs.com/menu_presentation/menu_features/features_overview
1
Presentation
https://www.nitrc.org/projects/isc-toolbox
1
ISC-toolbox
https://www.nitrc.org/projects/mach2qtl
1
Mach2QTL
https://www.nitrc.org/projects/mricron
1
Mricron
https://www.nitrc.org/projects/nirs_spm
1
NIRS_SPM
https://www.oculus.de/produkte/topographie/keratograph-5m/keratograph-5m
1
R-Scan
https://www.olympus-lifescience.com/software/cellsens
1
cellSens Dimension
https://www.pacb.com/products-and-services/analytical-software/smrt-analysis
1
SMRT analysis
https://www.pbarrett.net/Bootstrap/Bootstrap.html
1
Bootstrap
https://www.pbarrett.net/Gower/Gower.html
1
Gower
https://www.pharmacompass.com/pdf/party/content/omnicomm-systems-inc-party-content-1496916964.pdf
1
Promasys
https://www.phi.com/surface-analysis-equipment/system-software/multipak-data-reduction-software.html
1
MultiPak
https://www.platonsoft.nl/platon
1
PLATON
https://www.processmacro.org
1
PROCESS
https://www.proctoru.com
1
ProctorU
https://www.psb.ugent.be/cbd/papers/BiNGO/Home.html
1
BiNGO
https://www.qiagen.com/us/products/discovery-and-translational-research/epigenetics/dna-methylation/methylation-specific-pcr/rotor-gene-q
1
Rotor-Gene Q
https://www.quanser.com/products/quarc-real-time-control-software
1
Quarc
https://www.questionpro.de
1
Questionpro
https://www.rigaku.com/downloads/software/crystalclear
1
CrystalClear
https://www.rogue-research.com/tms/brainsight-tms
1
Brainsight
https://www.sartorius.com/en/products/process-analytical-technology/data-analytics-software/mvda-software/simca
1
SIMCA-P
https://www.solidworks.com/product/solidworks-3d-cad
1
CAD
https://www.sr-research.com/data-viewer
1
EyeLink Data Viewer
https://www.sr-research.com/experiment-builder
1
Experiment Builder
https://www.statisticalinnovations.com/latent-gold
1
LatentGold
https://www.statistix.com
1
Satistix
https://www.tdt.com/component/opensorter
1
Open sorter
https://www.tdt.com/docs/synapse/gizmos/pca-spike-sorting
1
principal component analysis spike sorter
https://www.tedia.eu/products/sw-scopewin.html
1
ScopeWin
https://www.textronsystems.com/products/lidar-analyst
1
LiDAR Analyst
https://www.theppinetwork.com
1
PPI Network
https://www.thermofisher.com/order/catalog/product/4381867#/4381867
1
Peakscanner
https://www.thermofisher.com/order/catalog/product/4474978
1
SeqScape
https://www.thermofisher.com/order/catalog/product/CHROMELEON7#/CHROMELEON7
1
Chromeleon
https://www.thermofisher.com/order/catalog/product/OPTON-30965#/OPTON-30965
1
Xcalibur
https://www.tse-systems.com/product-details/videomot2
1
Videomot
https://www.va.gov/vdl/documents/Clinical/Comp_Patient_Recrd_Sys_(CPRS)/cprsguium.pdf
1
VA Computerized Patient Record System
https://www.verisk.com/archived/2011/verisk-health-s-dxcg-risk-solutions-technology-ready-to-support-industry-adoption-of-icd-10-cm
1
Sightlines DxCG Risk Solutions
https://www.wikidata.org/wiki/Q101554882
1
Soscisurvey
https://www.wikidata.org/wiki/Q104854189
1
dplyr
https://www.wikidata.org/wiki/Q106382290
1
SurveyMonkey
https://www.wikidata.org/wiki/Q11261
1
Word
https://www.wikidata.org/wiki/Q11266
1
PowerPoint
https://www.wikidata.org/wiki/Q1129895
1
Java Advanced Imaging
https://www.wikidata.org/wiki/Q11393
1
VirtualBox
https://www.wikidata.org/wiki/Q1153889
1
DIVA-GIS
https://www.wikidata.org/wiki/Q115494
1
Waikato Environment for Knowledge Analysis
https://www.wikidata.org/wiki/Q1161680
1
JMP
https://www.wikidata.org/wiki/Q1235617
1
Photofiltre
https://www.wikidata.org/wiki/Q1243769
1
Quicktime
https://www.wikidata.org/wiki/Q129793
1
Photoshop
https://www.wikidata.org/wiki/Q1301762
1
OsiriX
https://www.wikidata.org/wiki/Q1329181
1
QGIS
https://www.wikidata.org/wiki/Q1340244
1
Endnote
https://www.wikidata.org/wiki/Q134067
1
Visual Studio
https://www.wikidata.org/wiki/Q1373457
1
PyMOL
https://www.wikidata.org/wiki/Q1471909
1
Minitab
https://www.wikidata.org/wiki/Q1575
1
Internet Explorer
https://www.wikidata.org/wiki/Q15777
1
C
https://www.wikidata.org/wiki/Q1635410
1
NLTK
https://www.wikidata.org/wiki/Q165277
1
OpenCV
https://www.wikidata.org/wiki/Q165658
1
Flash
https://www.wikidata.org/wiki/Q16691
1
OpenSUSE
https://www.wikidata.org/wiki/Q16975296
1
PathVisio
https://www.wikidata.org/wiki/Q17029600
1
I-TASSER
https://www.wikidata.org/wiki/Q17042611
1
NCSS
https://www.wikidata.org/wiki/Q17054505
1
Google Cloud
https://www.wikidata.org/wiki/Q17085079
1
Stan
https://www.wikidata.org/wiki/Q1726452
1
MASCOT
https://www.wikidata.org/wiki/Q1797907
1
Land Cover Classification System
https://www.wikidata.org/wiki/Q18387989
1
TargetScan
https://www.wikidata.org/wiki/Q18411871
1
G*Power
https://www.wikidata.org/wiki/Q188531
1
Objective-C
https://www.wikidata.org/wiki/Q190478
1
Ruby on Rails
https://www.wikidata.org/wiki/Q193321
1
Java Virtual Machine
https://www.wikidata.org/wiki/Q197492
1
SciPy
https://www.wikidata.org/wiki/Q197520
1
NumPy
https://www.wikidata.org/wiki/Q201904
1
Qt
https://www.wikidata.org/wiki/Q2038919
1
OpenSim
https://www.wikidata.org/wiki/Q2066865
1
Protégé
https://www.wikidata.org/wiki/Q207902
1
Acrobat
https://www.wikidata.org/wiki/Q2086703
1
CRAN
https://www.wikidata.org/wiki/Q21207
1
Windows Mobile
https://www.wikidata.org/wiki/Q21447895
1
TensorFlow
https://www.wikidata.org/wiki/Q215016
1
Illustrator
https://www.wikidata.org/wiki/Q215273
1
RHEL
https://www.wikidata.org/wiki/Q216293
1
Pong
https://www.wikidata.org/wiki/Q220182
1
Linux Red Hat
https://www.wikidata.org/wiki/Q230036
1
jQuery
https://www.wikidata.org/wiki/Q234657
1
Actionscript
https://www.wikidata.org/wiki/Q2363545
1
FreeSurfer
https://www.wikidata.org/wiki/Q2370
1
C#
https://www.wikidata.org/wiki/Q2378
1
Visual Basic
https://www.wikidata.org/wiki/Q2383032
1
Chemistry Development Kit
https://www.wikidata.org/wiki/Q23992212
1
NeuroSynth
https://www.wikidata.org/wiki/Q2407
1
C++
https://www.wikidata.org/wiki/Q24451405
1
R Studio
https://www.wikidata.org/wiki/Q2493781
1
Bitbucket
https://www.wikidata.org/wiki/Q258956
1
SPLITSTREE
https://www.wikidata.org/wiki/Q25931876
1
Scion image
https://www.wikidata.org/wiki/Q26229866
1
JASP
https://www.wikidata.org/wiki/Q28447694
1
MOE
https://www.wikidata.org/wiki/Q28865
1
Python
https://www.wikidata.org/wiki/Q28974859
1
GATK
https://www.wikidata.org/wiki/Q29876897
1
CLC Genomic Workbench
https://www.wikidata.org/wiki/Q30178153
1
Genevestigator
https://www.wikidata.org/wiki/Q3047275
1
InterPro
https://www.wikidata.org/wiki/Q30593150
1
SnpEff
https://www.wikidata.org/wiki/Q326489
1
ggplot2
https://www.wikidata.org/wiki/Q3376999
1
LISREL
https://www.wikidata.org/wiki/Q3478650
1
Sente
https://www.wikidata.org/wiki/Q3505312
1
Surfer
https://www.wikidata.org/wiki/Q35773
1
Safari
https://www.wikidata.org/wiki/Q381
1
Ubuntu
https://www.wikidata.org/wiki/Q42274
1
Google Earth
https://www.wikidata.org/wiki/Q42979
1
Basic
https://www.wikidata.org/wiki/Q4654344
1
AsReml
https://www.wikidata.org/wiki/Q4692169
1
ImpaxEE
https://www.wikidata.org/wiki/Q47607
1
SQL
https://www.wikidata.org/wiki/Q4784993
1
ArcMap
https://www.wikidata.org/wiki/Q48989793
1
Skyline
https://www.wikidata.org/wiki/Q5013404
1
ConQuest
https://www.wikidata.org/wiki/Q5014227
1
CSPRO
https://www.wikidata.org/wiki/Q507430
1
Tomcat
https://www.wikidata.org/wiki/Q5281973
1
DS modeling
https://www.wikidata.org/wiki/Q5288
1
tcl
https://www.wikidata.org/wiki/Q5425748
1
Fiji
https://www.wikidata.org/wiki/Q5462055
1
FlowJo
https://www.wikidata.org/wiki/Q5531616
1
Geneious
https://www.wikidata.org/wiki/Q5533486
1
Genome browser
https://www.wikidata.org/wiki/Q55641191
1
NQuery Advisor
https://www.wikidata.org/wiki/Q56291130
1
Open Data Kit
https://www.wikidata.org/wiki/Q5652128
1
Haploview
https://www.wikidata.org/wiki/Q580605
1
GDAL
https://www.wikidata.org/wiki/Q595758
1
MinGW-w64
https://www.wikidata.org/wiki/Q616360
1
tk
https://www.wikidata.org/wiki/Q631011
1
ArcView
https://www.wikidata.org/wiki/Q6316598
1
JAGS
https://www.wikidata.org/wiki/Q64189
1
MapInfo Professional
https://www.wikidata.org/wiki/Q64816680
1
BrainStorm
https://www.wikidata.org/wiki/Q667566
1
VBA
https://www.wikidata.org/wiki/Q67141781
1
FastQC
https://www.wikidata.org/wiki/Q6715328
1
MEGA
https://www.wikidata.org/wiki/Q67197176
1
Netcdf
https://www.wikidata.org/wiki/Q672307
1
NetLogo
https://www.wikidata.org/wiki/Q681360
1
OpenCL
https://www.wikidata.org/wiki/Q6862245
1
Mimics
https://www.wikidata.org/wiki/Q698
1
Firefox
https://www.wikidata.org/wiki/Q7002467
1
NEURON
https://www.wikidata.org/wiki/Q7016954
1
Newbler
https://www.wikidata.org/wiki/Q7095785
1
OpenEpi
https://www.wikidata.org/wiki/Q7096535
1
Openlab
https://www.wikidata.org/wiki/Q7265483
1
Q-LAB
https://www.wikidata.org/wiki/Q7305527
1
REDCap
https://www.wikidata.org/wiki/Q7307076
1
Refworks
https://www.wikidata.org/wiki/Q7314104
1
Reportlab
https://www.wikidata.org/wiki/Q733115
1
Mechanical Turk
https://www.wikidata.org/wiki/Q735748
1
Pixelmator
https://www.wikidata.org/wiki/Q7394802
1
Strand7
https://www.wikidata.org/wiki/Q7394951
1
SUDAAN
https://www.wikidata.org/wiki/Q741303
1
JDK
https://www.wikidata.org/wiki/Q746261
1
LabVIEW
https://www.wikidata.org/wiki/Q7512231
1
SigmaStat
https://www.wikidata.org/wiki/Q7673435
1
Tableau
https://www.wikidata.org/wiki/Q7715973
1
Debian
https://www.wikidata.org/wiki/Q777
1
Chrome
https://www.wikidata.org/wiki/Q7864116
1
Santa Cruz genome browser
https://www.wikidata.org/wiki/Q7935239
1
Virtuoso
https://www.wikidata.org/wiki/Q8023586
1
WinBugs
https://www.wikidata.org/wiki/Q80689
1
Access
https://www.wikidata.org/wiki/Q83303
1
Fortran
https://www.wikidata.org/wiki/Q838189
1
GLPK
https://www.wikidata.org/wiki/Q842014
1
Django
https://www.wikidata.org/wiki/Q847296
1
Visual C++
https://www.wikidata.org/wiki/Q850
1
MySQL
https://www.wikidata.org/wiki/Q85738947
1
ANNOVAR
https://www.wikidata.org/wiki/Q8811
1
HTML
https://www.wikidata.org/wiki/Q918
1
Twitter
https://www.wikidata.org/wiki/Q96075529
1
Pajek
https://www.wildblueberrymedia.net/pcord
1
PCORD
https://www.xlstat.com
1
XLSTAT
https://www.york.ac.uk/computational-immunology/software/aspasia
1
ASPASIA
https://www.zeiss.de/mikroskopie/produkte/mikroskopsoftware/zen.html
1
ZEN
https://www.zsl.org/science/software/coancestry
1
COANCESTRY
https://www.zsl.org/science/software/colony
1
COLONY
https://www1.montpellier.inra.fr/CBGP/software/FreeNA
1
FREENA
https://xcell.ucsf.edu
1
xCell
https://xenabrowser.net/hub
1
Xena